2024年
1、Wei Xin, Jianming Zhang, Yongdong Yu, Zhenbiao Yang*, Tongda Xu*, Wenxin Tang*.（2024）Root microbiota of tea plants regulate nitrogen homeostasis and theanine synthesis to influence tea quality. Curr. Biol.doi.org/10.1016.
2023年
1、Yongqiang Yu#, Wenxin Tang#, Wenwei Lin#, Wei Li#, Xiang Zhou#, Ying Li, Rong Chen, Rui Zheng, Guochen Qin, Wenhan Cao, Patricio Pérez-Henríquez, Rongfeng Huang, Jun Ma， Qiqi Qiu, Ziwei Xu, Ailing Zou, Juncheng Lin, Liwen Jiang, Tongda Xu*, Zhenbiao Yang.*（2023）ABLs and TMKs are co-receptors for extracellular auxin. Cell，118(24):e2102544118.
2、Zhenzhen Zhang#, Zhaochen Zhong#, and Yan Xiong*.（2023）Sailing in complex nutrient signaling networks: Where I am, where to go, and how to go? Mol. Plant.16(10):1635-1660.
3、Yi Zhang*, Tongda Xu, Juan Dong*（2023）Asymmetric cell division in plant development. J Integr Plant Biol.65(2)343-370.
4、Jian Zhang#, JianYuan#, Juncheng Lin#, Lixian Chen, Li-Yuan You, Shuling Chen, Li Peng, Chun-Han Wang, Jiamu Du, Cheng-Guo Duan.（2023）Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants.PNAS120(1):e2208525120.
5、Juncheng Lin, Qingshun Quinn Li.（2023）Coupling epigenetics and RNA polyadenylation: missing links.Trends Plant Sci.28(2):223-234.
6、Wen Jie Zhang, Yewei Zhou, Yi Zhang, Ying Hua Su, Tongda Xu*.（2023）Protein phosphorylation: A molecular switch in plant signaling.42(7):112729.
2022年
1、Yu Y, Zhong Z, Ma L, Xiang C, Chen J, Huang XY, Xu P, Xiong Y.（2022）Sulfate-TOR signaling controls transcriptional reprogramming for shoot apex activation. New Phytol. 236(4):1326-1338.
2、Ma J, Li Q, Zhang L, Cai S, Liu Y, Lin J, Huang R, Yu Y, Wen M, Xu T.（2022）High auxin stimulates callus through SDG8-mediated histone H3K36 methylation in Arabidopsis. J Integr Plant Biol. 2022 Dec;64(12):2425-2437.
3、Meng Y, Zhang N, Li J, Shen X, Sheen J, Xiong Y.（2022）TOR kinase, a GPS in the complex nutrient and hormonal signaling networks to guide plant growth and development. J Exp Bot. 73(20):7041-7054
4、Tian Y, Xin W, Lin J, Ma J, He J, Wang X, Xu T, Tang W. (2022) Auxin Coordinates Achene and Receptacle Development During Fruit Initiation in Fragaria vesca. Front Plant Sci. 13:929831.
2021年
1、Fu L., Liu Y., Qin G., Wu P., Zi H., Xu Z., Zhao X., Wang Y., Li Y., Yang S., Peng C., Wong C., Yoo S., Zuo Z., Liu R., Cho Y., Xiong Y (2021) The TOR-EIN2 axis mediates nuclear signalling to modulate plant growth. Nature. 591: 288-292
2、Liu Y., Duan X., Zhao X., Ding W., Wang Y., Xiong Y (2021) Diverse nitrogen signals activate convergent ROP2-TOR signaling in Arabidopsis. Developmental Cell. 56: 1283-1295
3、Yang J, He H, He Y, Zheng Q, Li Q, Feng X, Wang P, Qin G, Gu Y, Wu P, Peng C, Sun S, Zhang Y, Wen M, Chen R, Zhao Y, Xu T* (2021) TMK1-based auxin signaling regulates abscisic acid responses via phosphorylating ABI1/2 in Arabidopsis. Proc Natl Acad Sci USA. 118(24):e2102544118
4、Liu Y., Xiong Y (2021) Liquid culture system for efficient depletion of the endogenous nutrients in Arabidopsis seedlings. STAR Protocols. 2, 100922
5、Wenwei Lin, Xiang Zhou, Wenxin Tang, Koji Takahashi, Xue Pan, Jiawei Dai, Hong Ren, Xiaoyue Zhu, Songqin Pan, Haiyan Zheng, William M. Gray, Tongda Xu, Toshinori Kinoshita, Zhenbiao Yang (2021) TMK-based cell-surface auxin signalling activates cell-wall acidification. Nature599:278–282
2020年
1、Yuan X., Xu P., Yu Y., Xiong Y (2020) Glucose-TOR signaling regulates PIN2 stability to orchestrate auxin gradient and cell expansion in Arabidopsis root. Proc Natl Acad Sci USA. 117(51): 32223-32225
2、Fu L., Wang P., Xiong Y (2020) Target of rapamycin signaling in plant stress responses. Plant Physiology, 182(4) 1613-1623.
3、Anirban Baral, Bibek Aryal, Kristoffer Jonsson, Emily Morris, Elsa Demes, Shogo Takatani, Stéphane Verger, Tongda Xu, Malcolm Bennett, Olivier Hamant, Rishikesh P Bhalerao (2020) External Mechanical Cues Reveal a Katanin-Independent Mechanism behind Auxin-Mediated Tissue Bending in Plants. Dev Cell 56(1):67-80.e3.
4、Bian C, Guo X, Zhang Y, Wang L, Xu T, DeLong A, and Dong J* (2020) Protein phosphatase 2A promotes stomatal development by stabilizing SPEECHLESS in Arabidopsis. Proc Natl Acad Sci USA.117 (23) 13127-13137
5、Wang Q#, Qin G#, Cao M, Chen R, He Y, Yang L, Zeng Z, Yu Y, Gu Y, Xing W, Tao A, and Xu T*(2020) A phosphorylation-based switch controls TAA1-mediated auxin biosynthesis in plants. Nature Communications. 11 (1), 1-10
6、Ye B, Shang G, Pan Y, Xu Z, Zhou C, Mao Y, Bao N, Sun L, Xu T, Wang J*. (2020) AP2/ERF Transcription Factors Integrate Age and Wound Signals for Root Regeneration. The Plant Cell 32 (1), 226-241
2019年
1、Cao M#, Chen R#, Li P#, Yu Y, Zheng R, Ge D, Zheng W, Wang X, Gu Y, Gelova Z, Friml J, Zhang H, Liu R, He J, Xu T* (2019) TMK1-mediated auxin signalling regulates differential growth of the apical hook. Nature, 568:240–243
2、Zhang N, Meng Y, Li X, Zhou Y, Ma L, Fu L, Schwarzlander M, Liu H, Xiong Y (2019) Metabolite-mediated TOR signaling regulates the circadian clock in Arabidopsis. Proc Natl Acad Sci USA. 116 (51): 25395-25397
3、Huang R, Zheng R, He J, Zhou Z, Wang J, Xiong Y, Xu T (2019) Noncanonical auxin signaling reglulates cell division pattern during lateral root development. Proc Natl Acad Sci USA. 116 (42): 21285-21290
4、Guo X, Wang Y, Zhao P, Xu P, Yu G, Zhang L, Xiong Y, Xiang C (2019) ATEDT1/HDG11 regualtes stomatal density and water use efficiency via ERECTA and E2Fa. New Phytol. 223 (3): 1478-1488
5、Zhang Y, Xiong Y, Liu R, Xue HW, Yang Z (2019) The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division. Proc Natl Acad Sci USA. 116 (32): 16121-16126
6、Yue Wu, Lin Shi, Lei Li, Liwen Fu, Yanlin Liu, Yan Xiong, Jen Sheen (2019). Integration of nutrient, energy, light and hormone signalling via TOR in plants. Journal of Experimental Botany. 70 (8):2227-2238.
7、C Delay, K Chapman, M Taleski, Y Wang, S Tyagi, Y Xiong, N Imin, M Djordjevic (2019) CEP3 levels affect starvation-related growth responses of the primary root. J. Exp. Bot. 70(18): 4763-4774.
8、Wang L, Cheng M, Yang Q, Li J, Wang X, Zhou Q, Nagawa S, Xia B, Xu T, Huang R, He J, Li C, Fu Y, Liu Y, Bao J, Wei H, Li H, Tan L, Gu Z, Xia A, Huang X, Yang Z, Deng X (2019) Arabinogalactan protein–rare earth element complexes activate plant endocytosis.Proc Natl Acad Sci USA. 116 (28), 14349-14357
2018年
1、Pengcheng Wang, Yang Zhao, Zhongpeng Li, Chuan-Chih Hsu, Xue Liu, Liwen Fu, Yueh-Ju Hou, Yanyan Du, Shaojun Xie, Chunguang Zhang, Jinghui Gao, Minjie Cao, Xiaosan Huang, Yingfang Zhu, Kai Tang, Xingang Wang, W. Andy Tao, Yan Xiong*, Jian-Kang Zhu* (2018) Reciprocal regulation of the TOR kinase and ABA receptor balances plant growth and stress response. Molecular Cell 69:100-112.
2、Liang H, Zhang Y, Martinez P, Rasmussen C, Xu T*,Yang Z* (2018) The Microtubule-Associated Protein IQ67 DOMAIN5 Modulates Microtubule Dynamics and Pavement Cell Shape , Plant Physiology, 2018.08, 177(4): 1555~1568
3、Li H, Luo N, Wang W, Liu Z, Chen J, Zhao L, Tan L, Wang C, Qin Y, Li C, Xu T, Yang Z (2018) The REN4 rheostat dynamically coordinates the apical and lateral domains of Arabidopsis pollen tubes. Nature communications 9 (1), 1-15
4、Guanhong Chen, Mingjung Liu, Yan Xiong, Jen Sheen, Shu-Hsing Wu (2018). TOR and RPS6 transmit light signals to enhance protein translation in deetiolating Arabidopsis seedlings. Proc Natl Acad Sci USA. 115 (50) 12823-12828.
5、V. Halder, J. Oeljeklaus J, G. Heilmann, JH. Krahn, Y. Liu, Yan Xiong, M. Schlicht, J Schillinger, B Kracher, M. Ehrmann, E Kombrink, F Kaschani, M Kaiser. (2018) Identification of the natural product rotihibin A as a TOR kinase signaling inhibitor by unbiased transcriptional profiling. Chemistry. doi:10. 1002/chem.201802647.
2017年
1、Cai W, Li X, Liu Y,Wang Y, Zhou Y, Xu T*, Xiong Y* (2017) COP1 integrates light signals to ROP2 for cell cycle activation. Plant signaling & behavior 12 (9), e1363946
2、Li X, Cai W, Liu Y, Li Y, Fu L, Liu Z, Xu L, Liu H, Xu T*, and Xiong Y* (2017) Differential TOR activation and cell proliferation in Arabidopsis root and shoot apexes. Proc Natl Acad Sci USA. 114:2765-2770.
2016年
1、Li X, Ma D, Lu X, Hu X, Huang R, Liang T, Xu T, Tobin E, Liu H.(2016) Blue Light- and Low Temperature-Regulated COR27 and COR28 Play Roles in the Arabidopsis Circadian Clock , The Plant Cell, 2016.11, 28(11): 2755~2769
2015年
1、Yan Xiong, Jen Sheen (2015) Novel links in the plant TOR kinase signaling network. Curr. Opin. Plant Biol. 28:83-91
2、Zhenyu Cheng, Jianfeng Li, Yajie Niu, Xuecheng Zhang, Owen Woody, Yan Xiong, Slavica Djonovic, Yves Millet, Jenifer Bush, Brendan McConkey, Jen Sheen and Frederick M. Ausubel (2015) Pathogen-secreted proteases activate a novel plant immune pathway. Nature. 521: 213-216.
3、J Chen, F Wang, S Zheng, Xu T, Yang Z (2015) Pavement cells: a model system for non-transcriptional auxin signalling and crosstalks. Journal of experimental botany 66 (16), 4957-4970
2014年
1、Xu T, Dai N, Chen J, Nagawa S, Cao M, Li H, Zhou Z, Chen X, Rycke R, Rakusova H, Wang W, Jones A, Friml J, Patterson S, Bleecker A, Yang Z*. (2014) Cell surface ABP1-TMK auxin sensing complex activates ROP GTPase signaling. Science, 343:1025-1028
2、Yan Xiong*, Jen Sheen* (2014) The role of target of rapamycin signaling networks in plant growth and metabolism. Plant Physiology, 164: 499-512.
3、Gu X, Xu T, He Y (2014) A Histone H3 Lysine-27 Methyltransferase Complex Represses Lateral Root Formation in Arabidopsis thaliana. Molecular Plant, 2014.6, 7(6): 977~988
2013年
1、Yan Xiong*, Jen Sheen (2013) Moving beyond translation, glucose-TOR signaling in the transcriptional control of cell cycle. Cell Cycle, 12(13), 1989. * Corresponding author
2、Yan Xiong*, Matthew McCormack, Lei Li, Qi Hall, Chengbin Xiang, Jen Sheen* (2013) Glucose-TOR signalling orchestrates transcriptome reprogramming and meristem activation. Nature. 496: 181-186 (elected by Faculty of 1000).
3、Li H, Xu T, Lin D, Wen M, Xie M, Duclercq J, Bielach A, Kim J, Reddy GV, Zuo J, Benková E, Friml J, Guo H, Yang Z.. (2013) Cytokinin signaling regulates pavement cell morphogenesis in Arabidopsis. Cell Research, 2012.146:1038
2012年
1、Yan Xiong, Jen Sheen (2012) Rapamycin and glucose-target of rapamycin (TOR) signaling in plants. Journal of Biological Chemistry. 287, 2836-2842 (elected by Faculty of 1000)
2、Nagawa S*, Xu T*, Lin D, Dhonukshe P, Zhang X, Friml J, Scheres B, Fu Y, Yang Z. (2012) ROP GTPase-dependent actin microfilaments promote PIN1 polarization by localized inhibition of clathrin-dependent endocytosis. PLOS Biology, 10:e1001299. *Co-First Author.
3、Lin D, Nagawa S, Chen J, Cao L, Chen X, Xu T, Li H, Dhonukshe P, Yamamuro C, Friml J, Scheres B, Fu Y and Yang Z. (2012) A ROP GTPase-Dependent Auxin Signaling Pathway Regulates the Subcellular Distribution of PIN2 in Arabidopsis Roots. Current Biology 22: 1319-1325.
2011年
1、Xu T. (2011) Rho GTPase Activity Analysis in Plant Cells. Plant Signalling Networks: Methods and Protocols Chapter 10:135-144
2、Xu T, Nagawa S, Yang Z. (2011) Uniform auxin triggers the Rho GTPase-dependent formation of interdigitation patterns in pavement cells. Small GTPases 0.0861111111111:
3、Jianfeng Li, Jenifer Bush, Yan Xiong, Lei Li, Matthew McCormack (2011) Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split firefly luciferase complementation. PLoS ONE 6(11): e27364 (elected by Faculty of 1000)
2010年及以前
1、Xu T, Wen M, Nagawa S, Fu Y, Chen JG, Wu MJ, Perrot-Rechenmann C, Friml J, Jones AM, Yang Z*. (2010) Cell Surface- and Rho GTPase-Based Auxin Signaling Controls Cellular Interdigitation in Arabidopsis. Cell, 143:99-110
2、Nagawa S, Xu T, Yang Z. (2010) RHO GTPase in plants: Conservation and invention of regulators and effectors. Small GTPases 0.0430555555555: 78-88
3、Fu Y, Xu T, Zhu L, Wen M, Yang Z. (2009) A ROP GTPase signaling pathway controls cortical microtubule ordering and cell expansion in Arabidopsis. Current Biology 19: 1827-1832
4、Yimo Liu*, Yan Xiong*, Diane C. Bassham (2009) Autophagy is required for plant tolerance of drought and salt stress. Autophagy, 5:954-963. (*Equal contribution)
5、Sang-Dong Yoo, Young-Hee Cho, Guillaume Tena, Yan Xiong, Jen Sheen (2008) Dual control of nuclear EIN3 by bifurcate MAPK cascades in C2H4 signalling. Nature, 451:789-795.
6、Jen Sheen, Ping He, Libo Shan, Yan Xiong, Guillaume Tena, Sangdong Yoo, Younghee Cho, Marie Boudsocq, Horim Lee (2008) Signaling specificity and complexity of MAPK cascades in plant innate immunity. Biology of Molecular Plant-Microbe Interactions, Chapter 86
7、Yan Xiong, Anthony L. Contento, Diane C. Bassham (2007) Disruption of autophagy results in constitutive oxidative stress in Arabidopsis. Autophagy, 3: 257-258.
8、Yan Xiong,Anthony L. Contento, Phan Quang Nguyen, Diane C. Bassham (2007)Degradation of oxidized proteins by autophagy during oxidative stress in Arabidopsis. Plant Physiology. 143: 291-299.
9、Yan Xiong, Anthony L. Contento,Diane C. Bassham. (2005) AtATG18a is required for the formation of autophagosomes during nutrient stress and senescence in Arabidopsis thaliana. Plant Journal. 42: 535-546.
10、Anthony L. Contento*, Yan Xiong*, Diane C. Bassham. (2005) Visualization of autophagy in Arabidopsis using the fluorescent dye monodansylcadaverine and a GFP-AtATG8e fusion protein. Plant Journal. 42:598-608. (*Equal contribution)
11、Wei-min Li, Qing-dai Liu, Yan Xiong, Shu-Fang Wang, Ning-ning Wang, Yong Wang (2003) Significant role of cytokinins in maintaining the life of fronds in Spirodela polyrrhiza. Journal of Plant Physiology and Molecular Biology. 29 (3): 215-220
12、Yan Xiong, Cuimin Liu, Shufang Wang, Ningning Wang, Yong Wang (2002) Chloroplast Genome and the Regulation of Chloroplast-encoded Gene Expression.Plant PhysiologyCommunications 38 (3):264-270
13、Cuimin Liu, Yan Xiong, Shufang Wang, Ningning Wang, Yong Wang (2002)cDNA Cloning and Expression of rbcS Gene in Spirodela polyrrhiza.Plant Physiology Communications 38(3): 221-225